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* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
42 lines
1 KiB
YAML
42 lines
1 KiB
YAML
name: pairix
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description: |
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a tool for indexing and querying on a block-compressed text file
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containing pairs of genomic coordinates
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keywords:
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- index
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tools:
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- pairix:
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description: 2D indexing on bgzipped text files of paired genomic coordinates
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homepage: "https://github.com/4dn-dcic/pairix"
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documentation: "https://github.com/4dn-dcic/pairix"
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tool_dev_url: "https://github.com/4dn-dcic/pairix"
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doi: ""
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- pair:
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type: file
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description: pair file
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- index:
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type: file
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description: pair index file
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pattern: "*.px2"
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authors:
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- "@jianhong"
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