mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
40 lines
1.1 KiB
YAML
40 lines
1.1 KiB
YAML
name: picard_mergesamfiles
|
|
description: Merges multiple BAM files into a single file
|
|
keywords:
|
|
- merge
|
|
- alignment
|
|
- bam
|
|
- sam
|
|
tools:
|
|
- picard:
|
|
description: |
|
|
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS)
|
|
data and formats such as SAM/BAM/CRAM and VCF.
|
|
homepage: https://broadinstitute.github.io/picard/
|
|
documentation: https://broadinstitute.github.io/picard/
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bam:
|
|
type: file
|
|
description: List of BAM files
|
|
pattern: "*.{bam}"
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bam:
|
|
type: file
|
|
description: Merged BAM file
|
|
pattern: "*.{bam}"
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
authors:
|
|
- "@drpatelh"
|