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* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
32 lines
929 B
YAML
32 lines
929 B
YAML
name: samtools_faidx
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description: Index FASTA file
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keywords:
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- index
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- fasta
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tools:
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- samtools:
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description: |
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SAMtools is a set of utilities for interacting with and post-processing
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short DNA sequence read alignments in the SAM, BAM and CRAM formats, written by Heng Li.
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These files are generated as output by short read aligners like BWA.
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homepage: http://www.htslib.org/
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documentation: http://www.htslib.org/doc/samtools.html
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doi: 10.1093/bioinformatics/btp352
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input:
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- fasta:
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type: file
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description: FASTA file
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pattern: "*.{fa,fasta}"
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output:
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- fai:
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type: file
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description: FASTA index file
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pattern: "*.{fai}"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@drpatelh"
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- "@ewels"
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- "@phue"
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