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* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
44 lines
1.3 KiB
YAML
44 lines
1.3 KiB
YAML
name: seqtk_sample
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description: Subsample reads from FASTQ files
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keywords:
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- sample
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tools:
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- seqtk:
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description: Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. Seqtk sample command subsamples sequences.
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homepage: https://github.com/lh3/seqtk
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documentation: https://docs.csc.fi/apps/seqtk/
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tool_dev_url: https://github.com/lh3/seqtk
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: List of input FastQ files of size 1 and 2 for single-end and paired-end data,respectively.
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pattern: "*.{fastq.gz}"
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- sample_size:
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type: value
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description: Number of reads to sample.
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- reads:
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type: file
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description: Subsampled FastQ files, 1 for single-end data or 2 for paired-end data.
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pattern: "*.{fastq.gz}"
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authors:
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- "@kaurravneet4123"
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- "@sidorov-si"
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