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e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
35 lines
1.3 KiB
YAML
35 lines
1.3 KiB
YAML
- name: bwa mem single-end
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command: nextflow run ./tests/modules/bwa/mem -entry test_bwa_mem_single_end -c tests/config/nextflow.config
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tags:
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- bwa
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- bwa/mem
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files:
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- path: ./output/bwa/test.bam
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- path: ./output/index/bwa/genome.bwt
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md5sum: 0469c30a1e239dd08f68afe66fde99da
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- path: ./output/index/bwa/genome.amb
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md5sum: 3a68b8b2287e07dd3f5f95f4344ba76e
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- path: ./output/index/bwa/genome.ann
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md5sum: c32e11f6c859f166c7525a9c1d583567
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- path: ./output/index/bwa/genome.pac
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md5sum: 983e3d2cd6f36e2546e6d25a0da78d66
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- path: ./output/index/bwa/genome.sa
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md5sum: ab3952cabf026b48cd3eb5bccbb636d1
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- name: bwa mem paired-end
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command: nextflow run ./tests/modules/bwa/mem -entry test_bwa_mem_paired_end -c tests/config/nextflow.config
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tags:
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- bwa
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- bwa/mem
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files:
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- path: ./output/bwa/test.bam
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- path: ./output/index/bwa/genome.bwt
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md5sum: 0469c30a1e239dd08f68afe66fde99da
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- path: ./output/index/bwa/genome.amb
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md5sum: 3a68b8b2287e07dd3f5f95f4344ba76e
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- path: ./output/index/bwa/genome.ann
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md5sum: c32e11f6c859f166c7525a9c1d583567
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- path: ./output/index/bwa/genome.pac
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md5sum: 983e3d2cd6f36e2546e6d25a0da78d66
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- path: ./output/index/bwa/genome.sa
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md5sum: ab3952cabf026b48cd3eb5bccbb636d1
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