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e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
17 lines
608 B
YAML
17 lines
608 B
YAML
- name: fastqc single-end
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command: nextflow run ./tests/modules/fastqc/ -entry test_fastqc_single_end -c tests/config/nextflow.config
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tags:
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- fastqc
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files:
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- path: ./output/fastqc/test_fastqc.html
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- path: ./output/fastqc/test_fastqc.zip
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- name: fastqc paired-end
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command: nextflow run ./tests/modules/fastqc/ -entry test_fastqc_paired_end -c tests/config/nextflow.config
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tags:
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- fastqc
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files:
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- path: ./output/fastqc/test_1_fastqc.html
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- path: ./output/fastqc/test_2_fastqc.html
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- path: ./output/fastqc/test_2_fastqc.zip
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- path: ./output/fastqc/test_1_fastqc.zip
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