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e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
11 lines
349 B
Text
11 lines
349 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { HISAT2_EXTRACTSPLICESITES } from '../../../../modules/hisat2/extractsplicesites/main.nf' addParams( options: [:] )
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workflow test_hisat2_extractsplicesites {
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gtf = file(params.test_data['sarscov2']['genome']['genome_gtf'], checkIfExists: true)
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HISAT2_EXTRACTSPLICESITES ( gtf )
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}
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