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https://github.com/MillironX/nf-core_modules.git
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e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
16 lines
637 B
YAML
16 lines
637 B
YAML
- name: picard markduplicates on sorted bam
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command: nextflow run ./tests/modules/picard/markduplicates -entry test_picard_markduplicates_sorted_bam -c tests/config/nextflow.config
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tags:
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- picard
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- picard/markduplicates
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files:
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- path: ./output/picard/test.MarkDuplicates.metrics.txt
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- path: ./output/picard/test.bam
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md5sum: fe8ed25b4bd25be0cc7a8730fc3b2f30
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- name: picard markduplicates on unsorted bam
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command: nextflow run ./tests/modules/picard/markduplicates -entry test_picard_markduplicates_unsorted_bam -c tests/config/nextflow.config
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tags:
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- picard
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- picard/markduplicates
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exit_code: 1
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