mirror of
https://github.com/MillironX/nf-core_modules.git
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e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
112 lines
6.1 KiB
YAML
112 lines
6.1 KiB
YAML
- name: quast with reference
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command: nextflow run ./tests/modules/quast -entry test_quast_ref -c ./tests/config/nextflow.config
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tags:
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- quast
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files:
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- path: ./output/quast/report.tsv
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- path: ./output/quast/quast/transposed_report.txt
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md5sum: 5dee51af1e7f916200d0a80f0c66be60
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- path: ./output/quast/quast/transposed_report.tex
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md5sum: 336ec8d7b403fe1e0519e3a39eadd691
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- path: ./output/quast/quast/icarus.html
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- path: ./output/quast/quast/transposed_report.tsv
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md5sum: 0e1b2eff1e8fd91a0bf80165d8f31ae5
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- path: ./output/quast/quast/report.tex
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md5sum: a9aac7d2ac2263df7e4599e4431c7393
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- path: ./output/quast/quast/report.txt
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md5sum: 2da78350f20819f2625bd467800700ad
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- path: ./output/quast/quast/report.tsv
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md5sum: 38fb41afadc09ffcbef62e42fea49f5e
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- path: ./output/quast/quast/report.html
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- path: ./output/quast/quast/report.pdf
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- path: ./output/quast/quast/quast.log
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- path: ./output/quast/quast/genome_stats/transcriptome_genomic_features_any.txt
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md5sum: 307b3bb1f42fc2f11a60a2e9846021d7
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- path: ./output/quast/quast/genome_stats/features_cumulative_plot.pdf
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- path: ./output/quast/quast/genome_stats/features_frcurve_plot.pdf
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- path: ./output/quast/quast/genome_stats/genome_info.txt
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md5sum: d0193b322079565dc78608291e9c44d1
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- path: ./output/quast/quast/genome_stats/transcriptome_gaps.txt
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md5sum: c52381f09ea40b6141be5232494727b6
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- path: ./output/quast/quast/basic_stats/cumulative_plot.pdf
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- path: ./output/quast/quast/basic_stats/Nx_plot.pdf
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- path: ./output/quast/quast/basic_stats/transcriptome_GC_content_plot.pdf
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- path: ./output/quast/quast/basic_stats/gc.icarus.txt
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md5sum: b3a770802ff9b2dd4ee8e47bddb2df3e
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- path: ./output/quast/quast/basic_stats/NGx_plot.pdf
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- path: ./output/quast/quast/basic_stats/GC_content_plot.pdf
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- path: ./output/quast/quast/aligned_stats/cumulative_plot.pdf
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- path: ./output/quast/quast/aligned_stats/NGAx_plot.pdf
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- path: ./output/quast/quast/aligned_stats/NAx_plot.pdf
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- path: ./output/quast/quast/contigs_reports/contigs_report_transcriptome.mis_contigs.info
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md5sum: d41d8cd98f00b204e9800998ecf8427e
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- path: ./output/quast/quast/contigs_reports/misassemblies_frcurve_plot.pdf
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- path: ./output/quast/quast/contigs_reports/contigs_report_transcriptome.unaligned.info
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md5sum: a8505cf206bf53ca369f7e3073fee587
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- path: ./output/quast/quast/contigs_reports/transposed_report_misassemblies.tex
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md5sum: d778f337899736cc62ed837b739b375c
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- path: ./output/quast/quast/contigs_reports/misassemblies_report.txt
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md5sum: 8b9a6d675a41bab6bf344dde2a20a939
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- path: ./output/quast/quast/contigs_reports/contigs_report_transcriptome.stdout
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- path: ./output/quast/quast/contigs_reports/all_alignments_transcriptome.tsv
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md5sum: c247152eb82b361106492642fd796e2c
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- path: ./output/quast/quast/contigs_reports/misassemblies_report.tex
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md5sum: ec1f7a1d1fb4a1b465057cf897b90b51
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- path: ./output/quast/quast/contigs_reports/transcriptome.mis_contigs.fa
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md5sum: d41d8cd98f00b204e9800998ecf8427e
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- path: ./output/quast/quast/contigs_reports/transposed_report_misassemblies.txt
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md5sum: fdb440c653e2f0306286798cacceaadb
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- path: ./output/quast/quast/contigs_reports/unaligned_report.tsv
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md5sum: 81d9597314356363a6b4e0d67027345a
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- path: ./output/quast/quast/contigs_reports/transposed_report_misassemblies.tsv
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md5sum: 3e8f449dd4481d1cfd4ce3ddab97b8e3
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- path: ./output/quast/quast/contigs_reports/unaligned_report.txt
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- path: ./output/quast/quast/contigs_reports/misassemblies_report.tsv
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md5sum: a32a09a0df811d1a75fbfe124081d1ca
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- path: ./output/quast/quast/contigs_reports/contigs_report_transcriptome.stderr
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- path: ./output/quast/quast/contigs_reports/misassemblies_plot.pdf
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- path: ./output/quast/quast/contigs_reports/unaligned_report.tex
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md5sum: e8e3bcb86da2cbd8eded980de80fa45c
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- path: ./output/quast/quast/contigs_reports/minimap_output/transcriptome.coords.filtered
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md5sum: ec9191d0acb5d5bce56b4842551a8598
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- path: ./output/quast/quast/contigs_reports/minimap_output/transcriptome.coords
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md5sum: dda3fc0addc41ecc0d5183dee6f95886
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- path: ./output/quast/quast/contigs_reports/minimap_output/transcriptome.used_snps.gz
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md5sum: 7b1db1b433cd95243a949bcb72e7e3a6
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- path: ./output/quast/quast/contigs_reports/minimap_output/transcriptome.sf
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- path: ./output/quast/quast/contigs_reports/minimap_output/transcriptome.unaligned
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md5sum: d41d8cd98f00b204e9800998ecf8427e
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- path: ./output/quast/quast/contigs_reports/minimap_output/transcriptome.coords_tmp
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md5sum: ce66eaeb99fdc11e4d50efadc1816e04
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- path: ./output/quast/quast/icarus_viewers/alignment_viewer.html
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- path: ./output/quast/quast/icarus_viewers/contig_size_viewer.html
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- name: quast without reference
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command: nextflow run ./tests/modules/quast -entry test_quast_noref -c ./tests/config/nextflow.config
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tags:
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- quast
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files:
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- path: ./output/quast/report.tsv
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md5sum: 074e239aac0f298cf4cd2a28a9bb5690
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- path: ./output/quast/quast/transposed_report.txt
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md5sum: 8784d7c7349498e1507e09fbf554625d
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- path: ./output/quast/quast/transposed_report.tex
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md5sum: 4c2a9dd0c1d3cbb80a2ac2577b5d363b
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- path: ./output/quast/quast/icarus.html
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md5sum: ecc0b67f3d4ff54568dfb83d8ac5911b
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- path: ./output/quast/quast/transposed_report.tsv
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md5sum: f0b5f65b2050af83b6d170d384c7616b
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- path: ./output/quast/quast/report.tex
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md5sum: 3da038cc5a02ef83e225c5277b87970b
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- path: ./output/quast/quast/report.txt
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md5sum: bd2faaef244f02aa072d544c0d6d6e71
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- path: ./output/quast/quast/report.tsv
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md5sum: 074e239aac0f298cf4cd2a28a9bb5690
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- path: ./output/quast/quast/report.html
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- path: ./output/quast/quast/report.pdf
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- path: ./output/quast/quast/quast.log
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- path: ./output/quast/quast/basic_stats/cumulative_plot.pdf
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- path: ./output/quast/quast/basic_stats/Nx_plot.pdf
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- path: ./output/quast/quast/basic_stats/genome_GC_content_plot.pdf
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- path: ./output/quast/quast/basic_stats/GC_content_plot.pdf
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- path: ./output/quast/quast/icarus_viewers/contig_size_viewer.html
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