mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-22 16:12:04 +00:00
906577873b
* New functions.nf * Convert code to create versions.yml * Update meta.yml * update output channel * Fix more meta.yml * Manually update remaining modules * remove superflous echo * Fix misformatted meta.yml files * Fix yaml, was list instead of dict * fix version for bcftools Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
44 lines
1.3 KiB
YAML
44 lines
1.3 KiB
YAML
name: seqtk_sample
|
|
description: Subsample reads from FASTQ files
|
|
keywords:
|
|
- sample
|
|
tools:
|
|
- seqtk:
|
|
description: Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. Seqtk sample command subsamples sequences.
|
|
homepage: https://github.com/lh3/seqtk
|
|
documentation: https://docs.csc.fi/apps/seqtk/
|
|
tool_dev_url: https://github.com/lh3/seqtk
|
|
licence: ['MIT']
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- reads:
|
|
type: file
|
|
description: List of input FastQ files of size 1 and 2 for single-end and paired-end data,respectively.
|
|
pattern: "*.{fastq.gz}"
|
|
- sample_size:
|
|
type: value
|
|
description: Number of reads to sample.
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "versions.yml"
|
|
- reads:
|
|
type: file
|
|
description: Subsampled FastQ files, 1 for single-end data or 2 for paired-end data.
|
|
pattern: "*.{fastq.gz}"
|
|
|
|
authors:
|
|
- "@kaurravneet4123"
|
|
- "@sidorov-si"
|