nf-core_modules/tests/modules/iqtree/test.yml at e971f538a99bfa190f36f9303bede205e00b90a4 - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-09-21 07:42:05 +00:00

James A. Fellows Yates e971f538a9

Module new version reporting fixes (#753 )

* Specify more guidelines on input channels

* Linting

* Updates based on code review

* Update README.md

* Fix broken sentence

* Fix IQ tree

* Fix picard markdup and merge sam

* Fix plink/vcf version

* Fix plink version output

* Fix prokka version command

* Fix pydamage

* Try fixing markduplicates

* Fix snpEff

* Fix vcftools version

* Fix pydamage and filtersamreads test run

* Fix MarkDuplicates tests

* Add missing unsorted checks

* Remove MD5 sym due to stochasicity in BAM file

2021-09-28 10:51:19 +01:00

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YAML

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 - name: iqtree test workflow
   command: nextflow run ./tests/modules/iqtree -entry test_iqtree -c tests/config/nextflow.config
   tags:
     - iqtree
   files:
     - path: output/iqtree/informative_sites.fas.treefile
       contains:
         - '(sample1:0.002'
         - '(sample2:0.005'
         - 'sample3:0.0005'
         - 'sample4:0.001'