nf-core_modules/tests/modules/gatk4/applybqsrspark/test.yml
2022-06-09 15:44:12 +02:00

28 lines
1.2 KiB
YAML

- name: gatk4 applybqsr test_gatk4_applybqsr_spark
command: nextflow run tests/modules/gatk4/applybqsrspark -entry test_gatk4_applybqsr_spark -c tests/config/nextflow.config -c ./tests/modules/gatk4/applybqsrspark/nextflow.config
tags:
- gatk4
- gatk4/applybqsrspark
files:
- path: output/gatk4/test.bam
md5sum: 1901c819fcba0fdd5e2482e6dc8285ef
- path: output/gatk4/versions.yml
- name: gatk4 applybqsr test_gatk4_applybqsr_spark_intervals
command: nextflow run tests/modules/gatk4/applybqsrspark -entry test_gatk4_applybqsr_spark_intervals -c tests/config/nextflow.config -c ./tests/modules/gatk4/applybqsrspark/nextflow.config
tags:
- gatk4
- gatk4/applybqsrspark
files:
- path: output/gatk4/test.bam
- path: output/gatk4/versions.yml
- name: gatk4 applybqsr test_gatk4_applybqsr_spark_cram
command: nextflow run tests/modules/gatk4/applybqsrspark -entry test_gatk4_applybqsr_spark_cram -c tests/config/nextflow.config -c ./tests/modules/gatk4/applybqsrspark/nextflow.config
tags:
- gatk4
- gatk4/applybqsrspark
files:
- path: output/gatk4/test.cram
md5sum: 60f7c822a9f2833e11eb7bfd16e4421f
- path: output/gatk4/versions.yml