nf-core_modules/tests/modules/tiddit/sv/nextflow.config
Maxime U. Garcia b689b8ed88
TIDDIT - add --skip_assembly when no bwa specified (#1769)
add --skip_assembly when no bwa specified
2022-06-13 17:02:59 +02:00

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process {
publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
withName: TIDDIT_SV_NOBWA {
ext.args = '--skip_assembly'
}
}