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50 lines
1.4 KiB
YAML
50 lines
1.4 KiB
YAML
name: "emboss_seqret"
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description: Reads in one or more sequences, converts, filters, or transforms them and writes them out again
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keywords:
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- emboss
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- gff
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- embl
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- genbank
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- fasta
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- convert
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- swissprot
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tools:
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- "emboss":
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description: "The European Molecular Biology Open Software Suite"
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homepage: "https://www.ebi.ac.uk/Tools/sfc/emboss_seqret/"
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documentation: "https://emboss.bioinformatics.nl/cgi-bin/emboss/help/seqret"
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tool_dev_url: "http://emboss.open-bio.org/"
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doi: "10.1016/s0168-9525(00)02024-2 "
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licence: ["GPL"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- sequence:
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type: file
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description: Input sequence query
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pattern: "*.{gff,em,gb,refseq,pir,swiss,sw,txt}"
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- out_ext:
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type: string
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description: File extension of the output file. Unless otherwise set by a flag in `ext.args`, the extension dictates the output file format.
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- outseq:
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type: file
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description: Converted sequence file
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pattern: "*"
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authors:
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- "@MillironX"
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