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* Update meta.yml by fixing html pattern expected Fixed html pattern typo: Before: pattern: "*.thml" After fix: pattern: "*.html" * main.nf for bbmap_clumpify * meta.yml for bbmap_clumpify * bbmap/clumpify via Gitpod and @mahesh-panchal guide * small changes to tests * explicit mention of output file pattern - *.clumped.fastq.gz * Update modules/bbmap/clumpify/main.nf Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se> * Update modules/bbmap/clumpify/main.nf Accepted @mahesh-panchal suggestions Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se> Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se> Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
18 lines
796 B
YAML
18 lines
796 B
YAML
- name: bbmap clumpify test_bbmap_clumpify_single_end
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command: nextflow run ./tests/modules/bbmap/clumpify -entry test_bbmap_clumpify_single_end -c ./tests/config/nextflow.config -c ./tests/modules/bbmap/clumpify/nextflow.config
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tags:
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- bbmap/clumpify
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- bbmap
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files:
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- path: output/bbmap/test.clumped.fastq.gz
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- path: output/bbmap/test.clumpify.log
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- name: bbmap clumpify test_bbmap_clumpify_paired_end
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command: nextflow run ./tests/modules/bbmap/clumpify -entry test_bbmap_clumpify_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/bbmap/clumpify/nextflow.config
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tags:
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- bbmap/clumpify
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- bbmap
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files:
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- path: output/bbmap/test.clumpify.log
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- path: output/bbmap/test_1.clumped.fastq.gz
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- path: output/bbmap/test_2.clumped.fastq.gz
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