mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-15 06:03:10 +00:00
90aef30f43
* Set process label to `process_single` for modules with no `task.cpus` usage * Fix tests of 'borked' modules * prettier * More modules are single-threaded and can use process_single * Adding process_single to hmmer/esl* modules * Fix failing tests * Prettier Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> Co-authored-by: Daniel Lundin <erik.rikard.daniel@gmail.com>
36 lines
1.3 KiB
Text
36 lines
1.3 KiB
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { HAMRONIZATION_DEEPARG } from '../../../../modules/hamronization/deeparg/main.nf'
|
|
include { HAMRONIZATION_DEEPARG as HAMRONIZATION_DEEPARG_SECOND } from '../../../../modules/hamronization/deeparg/main.nf'
|
|
include { HAMRONIZATION_SUMMARIZE } from '../../../../modules/hamronization/summarize/main.nf'
|
|
|
|
workflow test_hamronization_summarize {
|
|
|
|
input = [
|
|
[ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['bacteroides_fragilis']['hamronization']['genome_mapping_potential_arg'], checkIfExists: true),
|
|
]
|
|
|
|
input2 = [
|
|
[ id:'test2', single_end:false ], // meta map
|
|
file(params.test_data['bacteroides_fragilis']['hamronization']['genome_mapping_potential_arg'], checkIfExists: true),
|
|
]
|
|
|
|
HAMRONIZATION_DEEPARG ( input, 'tsv', '1.0.2', '2' )
|
|
HAMRONIZATION_DEEPARG_SECOND ( input2, 'tsv', '1.0.2', '2' )
|
|
|
|
ch_deeparg_run_one = HAMRONIZATION_DEEPARG.out.tsv
|
|
ch_deeparg_run_two = HAMRONIZATION_DEEPARG_SECOND.out.tsv
|
|
|
|
ch_deeparg_run_one
|
|
.mix( ch_deeparg_run_two )
|
|
.map{
|
|
[ it[1] ]
|
|
}
|
|
.collect()
|
|
.set { ch_input_for_summarize }
|
|
|
|
HAMRONIZATION_SUMMARIZE ( ch_input_for_summarize , 'json' )
|
|
}
|