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https://github.com/MillironX/nf-core_modules.git
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454e0acc09
* update tests * update * update * make the manta inputs consistant for germline/somatic/tumoronly * match chromosomes to cram file (chr21) * undo genotypegvfs * undo genotypegvfs * include intervals * update md5 with interval Co-authored-by: Smith Nicholas <smith@in.tum.de>
19 lines
721 B
YAML
19 lines
721 B
YAML
- name: samtools mpileup test_samtools_mpileup
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command: nextflow run tests/modules/samtools/mpileup -entry test_samtools_mpileup -c tests/config/nextflow.config
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tags:
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- samtools
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- samtools/mpileup
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files:
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- path: output/samtools/test.mpileup.gz
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md5sum: 29455c36377196e8bc9cf831cf17b5dc
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- path: output/samtools/versions.yml
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- name: samtools mpileup test_samtools_mpileup_intervals
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command: nextflow run tests/modules/samtools/mpileup -entry test_samtools_mpileup_intervals -c tests/config/nextflow.config
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tags:
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- samtools
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- samtools/mpileup
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files:
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- path: output/samtools/test.mpileup.gz
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md5sum: d0538ec23b294245748ced92484b9a8d
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- path: output/samtools/versions.yml
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