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55 lines
1.4 KiB
YAML
55 lines
1.4 KiB
YAML
name: "happy_prepy"
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description: Pre.py is a preprocessing tool made to preprocess VCF files for Hap.py
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keywords:
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- happy
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- benchmark
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- haplotype
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tools:
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- "happy":
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description: "Haplotype VCF comparison tools"
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homepage: "https://www.illumina.com/products/by-type/informatics-products/basespace-sequence-hub/apps/hap-py-benchmarking.html"
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documentation: "https://github.com/Illumina/hap.py"
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tool_dev_url: "https://github.com/Illumina/hap.py"
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doi: ""
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licence: "['BSD-2-clause']"
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- vcf:
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type: file
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description: VCF file to preprocess
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pattern: "*.{vcf,vcf.gz}"
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- bed:
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type: file
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description: BED file
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pattern: "*.bed"
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- fasta:
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type: file
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description: FASTA file of the reference genome
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pattern: "*.{fa,fasta}"
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- fasta_fai:
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type: file
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description: The index of the reference FASTA
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pattern: "*.fai"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- vcf:
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type: file
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description: A preprocessed VCF file
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pattern: "*.vcf.gz"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@nvnieuwk"
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