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d16f1ea4d7
* add module for panaroo * update pirate test yaml * update panaroo test yaml * update pirate test yaml md5s * Update main.nf * Update main.nf * pin bioperl version
47 lines
1.3 KiB
YAML
47 lines
1.3 KiB
YAML
name: "panaroo_run"
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description: A fast and scalable tool for bacterial pangenome analysis
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keywords:
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- gff
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- pan-genome
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- alignment
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tools:
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- "panaroo":
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description: "panaroo - an updated pipeline for pangenome investigation"
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homepage: "https://gtonkinhill.github.io/panaroo/#/"
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documentation: "https://gtonkinhill.github.io/panaroo/#/gettingstarted/quickstart"
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tool_dev_url: "https://github.com/gtonkinhill/panaroo"
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doi: "10.1186/s13059-020-02090-4"
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licence: "['MIT']"
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- gff:
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type: file
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description: A set of GFF3 formatted files
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pattern: "*.{gff}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- results:
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type: directory
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description: Directory containing Panaroo result files
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pattern: "*/*"
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- aln:
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type: file
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description: Core-genome alignment produced by Panaroo (Optional)
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pattern: "*.{fasta}"
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authors:
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- "@rpetit3"
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