mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
eae945721d
* not working yet (db not found)
* modify deeparg/download module to return db-path
* 🪄
* Prettier
* add test.yml
* much prettier
* test.yml delete md5 for pot. empty files
* adapt test.yml
* test.yml again
* Apply suggestions from code review
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
31 lines
882 B
Text
31 lines
882 B
Text
process DEEPBGC_DOWNLOAD {
|
|
tag "download"
|
|
label 'process_low'
|
|
|
|
conda (params.enable_conda ? "bioconda::deepbgc=0.1.30" : null)
|
|
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
|
|
'https://depot.galaxyproject.org/singularity/deepbgc:0.1.30--pyhb7b1952_1':
|
|
'quay.io/biocontainers/deepbgc:0.1.30--pyhb7b1952_1' }"
|
|
|
|
output:
|
|
path "deepbgc_db/" , emit: db
|
|
path "versions.yml" , emit: versions
|
|
|
|
when:
|
|
task.ext.when == null || task.ext.when
|
|
|
|
script:
|
|
def args = task.ext.args ?: ''
|
|
|
|
"""
|
|
export DEEPBGC_DOWNLOADS_DIR='./deepbgc_db'
|
|
|
|
deepbgc \\
|
|
download
|
|
|
|
cat <<-END_VERSIONS > versions.yml
|
|
"${task.process}":
|
|
deepbgc: \$(echo \$(deepbgc info 2>&1 /dev/null/ | grep 'version' | cut -d " " -f3) )
|
|
END_VERSIONS
|
|
"""
|
|
}
|