mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 11:08:17 +00:00
66 lines
1.8 KiB
YAML
66 lines
1.8 KiB
YAML
name: "merquryfk_katgc"
|
|
description: A reimplemenation of Kat GC to work with FastK databases
|
|
keywords:
|
|
- k-mer
|
|
- GC content
|
|
tools:
|
|
- "merquryfk":
|
|
description: "FastK based version of Merqury"
|
|
homepage: "https://github.com/thegenemyers/MERQURY.FK"
|
|
documentation: ""
|
|
tool_dev_url: "https://github.com/thegenemyers/MERQURY.FK"
|
|
doi: ""
|
|
licence: "https://github.com/thegenemyers/MERQURY.FK/blob/main/LICENSE"
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- fastk_hist:
|
|
type: file
|
|
description: A histogram files from the program FastK
|
|
pattern: "*.hist"
|
|
- fastk_ktab:
|
|
type: file
|
|
description: ktab files from the program FastK
|
|
pattern: "*.ktab*"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- filled_gc_plot_png:
|
|
type: file
|
|
description: A filled GC content plot in PNG format
|
|
pattern: "*.fi.png"
|
|
- filled_gc_plot_pdf:
|
|
type: file
|
|
description: A filled GC content plot in PDF format
|
|
pattern: "*.fi.pdf"
|
|
- line_gc_plot_png:
|
|
type: file
|
|
description: A line GC content plot in PNG format
|
|
pattern: "*.ln.png"
|
|
- line_gc_plot_pdf:
|
|
type: file
|
|
description: A line GC content plot in PDF format
|
|
pattern: "*.ln.pdf"
|
|
- stacked_gc_plot_png:
|
|
type: file
|
|
description: A stacked GC content plot in PNG format
|
|
pattern: "*.st.png"
|
|
- stacked_gc_plot_pdf:
|
|
type: file
|
|
description: A stacked GC content plot in PDF format
|
|
pattern: "*.st.pdf"
|
|
|
|
authors:
|
|
- "@mahesh-panchal"
|