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f080015754
* style: Add prettier config files * build: Add prettier vscode extension * ci: Replace markdownlint and yamllint with prettier * style: Run prettier * style: Use indent of 2 for markdown as well https://github.com/nf-core/tools/pull/1470#issuecomment-1071028358 * style: Fix indent * style: Let editorconfig take over tab widths * style: yaml => yml * ci: Run prettier once Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se> Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se>
45 lines
1.2 KiB
YAML
45 lines
1.2 KiB
YAML
name: bcftools_annotate
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description: Add or remove annotations.
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keywords:
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- bcftools
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- annotate
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- vcf
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- remove
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- add
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tools:
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- annotate:
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description: Add or remove annotations.
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homepage: http://samtools.github.io/bcftools/bcftools.html
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documentation: https://samtools.github.io/bcftools/bcftools.html#annotate
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doi: 10.1093/bioinformatics/btp352
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licence: ["MIT"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- input:
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type: files
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description: Query VCF or BCF file, can be either uncompressed or compressed
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- vcf:
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type: file
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description: Compressed annotated VCF file
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pattern: "*_annotated.vcf.gz"
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- bcf:
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type: file
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description: Compressed annotated BCF file
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pattern: "*_annotated.bcf"
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authors:
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- "@projectoriented"
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