nf-core_modules/modules/custom/sratoolsncbisettings/main.nf
2022-05-11 17:33:45 +02:00

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process CUSTOM_SRATOOLSNCBISETTINGS {
tag 'ncbi-settings'
label 'process_low'
conda (params.enable_conda ? 'bioconda::sra-tools=2.11.0' : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/sra-tools:2.11.0--pl5321ha49a11a_3' :
'quay.io/biocontainers/sra-tools:2.11.0--pl5321ha49a11a_3' }"
output:
path('*.mkfg') , emit: ncbi_settings
path 'versions.yml', emit: versions
when:
task.ext.when == null || task.ext.when
shell:
config = "/LIBS/GUID = \"${UUID.randomUUID().toString()}\"\\n/libs/cloud/report_instance_identity = \"true\"\\n"
template 'detect_ncbi_settings.sh'
}