mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-15 06:03:10 +00:00
f4c69bc427
* bclconvert: initial commit * add most of tool * attempt at adding testing stub * add dockerfile + instructions * add container to module * update readme * more attempts at making stubs work * finish stub run * fix ci issues * more fixes to stub * add read version check to stub * fix some tests * update readme * fix version number * syntax fix * revert edit to output directory * Update modules/bclconvert/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/bclconvert/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * update meta.yaml * update thread usage * Update modules/bclconvert/main.nf Co-authored-by: Edmund Miller <edmund.a.miller@protonmail.com> * Escape env variable * Update modules/bclconvert/Dockerfile Co-authored-by: Mark Whelan <7407040+MrMarkW@users.noreply.github.com> * fix comments by @Emiller88 * fix task.cpus Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> Co-authored-by: Edmund Miller <edmund.a.miller@protonmail.com> Co-authored-by: Mark Whelan <7407040+MrMarkW@users.noreply.github.com>
22 lines
519 B
Text
22 lines
519 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { BCLCONVERT } from '../../../modules/bclconvert/main.nf'
|
|
|
|
process STUB_BCLCONVERT_INPUT {
|
|
output:
|
|
path "SampleSheet.csv" ,emit: samplesheet
|
|
path "DDMMYY_SERIAL_FLOWCELL" ,emit: run_dir
|
|
|
|
stub:
|
|
"""
|
|
mkdir DDMMYY_SERIAL_FLOWCELL
|
|
echo "SampleSheet" > SampleSheet.csv
|
|
"""
|
|
}
|
|
|
|
workflow test_bclconvert {
|
|
STUB_BCLCONVERT_INPUT ()
|
|
BCLCONVERT (STUB_BCLCONVERT_INPUT.out.samplesheet, STUB_BCLCONVERT_INPUT.out.run_dir)
|
|
}
|