mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
42 lines
1.3 KiB
Text
42 lines
1.3 KiB
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { SVDB_QUERY } from '../../../../modules/svdb/query/main.nf'
|
|
|
|
workflow test_svdb_query {
|
|
|
|
input = [ [ id:'test' ], // meta map
|
|
[ file(params.test_data['homo_sapiens']['illumina']['test_sv_vcf'], checkIfExists: true) ]
|
|
]
|
|
|
|
vcf_db = [
|
|
file(params.test_data['homo_sapiens']['genome']['gnomad_r2_1_1_sv_vcf_gz'], checkIfExists: true)
|
|
]
|
|
|
|
in_occs = ['AC']
|
|
in_frqs = ['AF']
|
|
out_occs = ['gnomad_svAC']
|
|
out_frqs = ['gnomad_svAF']
|
|
|
|
SVDB_QUERY ( input, in_occs, in_frqs, out_occs, out_frqs, vcf_db )
|
|
}
|
|
|
|
workflow test_svdb_query_multiple {
|
|
|
|
input = [ [ id:'test' ], // meta map
|
|
[ file(params.test_data['homo_sapiens']['illumina']['test_sv_vcf'], checkIfExists: true) ]
|
|
]
|
|
|
|
vcf_db = [
|
|
file(params.test_data['homo_sapiens']['genome']['gnomad_r2_1_1_sv_vcf_gz'], checkIfExists: true),
|
|
file(params.test_data['homo_sapiens']['genome']['gnomad2_r2_1_1_sv_vcf_gz'], checkIfExists: true)
|
|
]
|
|
|
|
in_occs = ['AC','AC']
|
|
in_frqs = ['AF','AF']
|
|
out_occs = ['gnomad_svAC','gnomad_svAC']
|
|
out_frqs = ['gnomad_svAF','gnomad_svAF']
|
|
|
|
SVDB_QUERY ( input, in_occs, in_frqs, out_occs, out_frqs, vcf_db )
|
|
}
|