nf-core_modules/tests/modules/adapterremoval/nextflow.config
James A. Fellows Yates 625098a408
Adapterremoval glob fix (#1391)
* fix: remove left-over unnecessary code

* Partial fix for AR module output declarations

* Remove `def` for prefix so useable in output block

* Fix tests

* Add adapterlist support

* Fix tests after addition of adapter list
2022-03-14 07:32:21 +01:00

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process {
publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
withName: ADAPTERREMOVAL_COLLAPSE {
ext.args = "--collapse"
}
}