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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
42 lines
1 KiB
YAML
42 lines
1 KiB
YAML
name: pairix
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description: |
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a tool for indexing and querying on a block-compressed text file
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containing pairs of genomic coordinates
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keywords:
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- index
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tools:
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- pairix:
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description: 2D indexing on bgzipped text files of paired genomic coordinates
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homepage: "https://github.com/4dn-dcic/pairix"
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documentation: "https://github.com/4dn-dcic/pairix"
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tool_dev_url: "https://github.com/4dn-dcic/pairix"
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doi: ""
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licence: ["MIT"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- pair:
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type: file
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description: pair file
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- index:
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type: file
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description: pair index file
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pattern: "*.px2"
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authors:
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- "@jianhong"
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