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ef585046a0
* feat added vcflib/vcfbreakmulti module * fix comments review * Update modules/vcflib/vcfbreakmulti/main.nf Co-authored-by: Anders Jemt <jemten@users.noreply.github.com> * Update modules/vcflib/vcfbreakmulti/main.nf Co-authored-by: Anders Jemt <jemten@users.noreply.github.com> * fix change required by reviewer * fix commiting pytest_modules.yml * fix version * fix version_ * Update tests/modules/vcflib/vcfbreakmulti/test.yml Co-authored-by: nvnieuwk <101190534+nvnieuwk@users.noreply.github.com> * fix undid previous commit * fix test * Update tests/modules/vcflib/vcfbreakmulti/test.yml Co-authored-by: nvnieuwk <101190534+nvnieuwk@users.noreply.github.com> * Update tests/modules/vcflib/vcfbreakmulti/test.yml Co-authored-by: nvnieuwk <101190534+nvnieuwk@users.noreply.github.com> Co-authored-by: Anders Jemt <jemten@users.noreply.github.com> Co-authored-by: nvnieuwk <101190534+nvnieuwk@users.noreply.github.com>
45 lines
1.2 KiB
YAML
45 lines
1.2 KiB
YAML
name: "vcflib_vcfbreakmulti"
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description: If multiple alleles are specified in a single record, break the record into several lines preserving allele-specific INFO fields
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keywords:
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- vcflib
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- vcflib/vcfbreakmulti
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tools:
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- "vcflib":
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description: "Command-line tools for manipulating VCF files"
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homepage: https://github.com/vcflib/vcflib
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documentation: https://github.com/vcflib/vcflib#USAGE
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doi: "https://doi.org/10.1101/2021.05.21.445151"
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licence: "['MIT']"
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- vcf:
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type: file
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description: Compressed VCF file
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pattern: "*.{.vcf.gz,vcf}"
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- tbi:
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type: file
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description: Index of VCF file
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pattern: "*.vcf.gz.tbi"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- vcf:
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type: file
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description: Compressed VCF file
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pattern: "*.vcf.gz"
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authors:
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- "@lucpen"
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