nf-core_modules/tests/modules/vcflib/vcfbreakmulti/main.nf
Lucpen ef585046a0
feat added vcflib/vcfbreakmulti module (#2134)
* feat added vcflib/vcfbreakmulti module

* fix comments review

* Update modules/vcflib/vcfbreakmulti/main.nf

Co-authored-by: Anders Jemt <jemten@users.noreply.github.com>

* Update modules/vcflib/vcfbreakmulti/main.nf

Co-authored-by: Anders Jemt <jemten@users.noreply.github.com>

* fix change required by reviewer

* fix commiting pytest_modules.yml

* fix version

* fix version_

* Update tests/modules/vcflib/vcfbreakmulti/test.yml

Co-authored-by: nvnieuwk <101190534+nvnieuwk@users.noreply.github.com>

* fix undid previous commit

* fix test

* Update tests/modules/vcflib/vcfbreakmulti/test.yml

Co-authored-by: nvnieuwk <101190534+nvnieuwk@users.noreply.github.com>

* Update tests/modules/vcflib/vcfbreakmulti/test.yml

Co-authored-by: nvnieuwk <101190534+nvnieuwk@users.noreply.github.com>

Co-authored-by: Anders Jemt <jemten@users.noreply.github.com>
Co-authored-by: nvnieuwk <101190534+nvnieuwk@users.noreply.github.com>
2022-09-30 16:57:18 +02:00

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { VCFLIB_VCFBREAKMULTI } from '../../../../modules/vcflib/vcfbreakmulti/main.nf'
workflow test_vcflib_vcfbreakmulti {
input = [
[ id:'test', single_end:false ], // meta map
file(params.test_data['sarscov2']['illumina']['test_vcf_gz'], checkIfExists: true),
file(params.test_data['sarscov2']['illumina']['test_vcf_gz_tbi'], checkIfExists: true)
]
VCFLIB_VCFBREAKMULTI ( input )
}