mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
47 lines
1.2 KiB
Text
47 lines
1.2 KiB
Text
process UNTAR {
|
|
tag "$archive"
|
|
label 'process_low'
|
|
|
|
conda (params.enable_conda ? "conda-forge::sed=4.7" : null)
|
|
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
|
|
'https://depot.galaxyproject.org/singularity/ubuntu:20.04' :
|
|
'ubuntu:20.04' }"
|
|
|
|
input:
|
|
tuple val(meta), path(archive)
|
|
|
|
output:
|
|
tuple val(meta), path("$untar"), emit: untar
|
|
path "versions.yml" , emit: versions
|
|
|
|
when:
|
|
task.ext.when == null || task.ext.when
|
|
|
|
script:
|
|
def args = task.ext.args ?: ''
|
|
def args2 = task.ext.args2 ?: ''
|
|
untar = archive.toString() - '.tar.gz'
|
|
"""
|
|
tar \\
|
|
-xzvf \\
|
|
$args \\
|
|
$archive \\
|
|
$args2 \\
|
|
|
|
cat <<-END_VERSIONS > versions.yml
|
|
"${task.process}":
|
|
untar: \$(echo \$(tar --version 2>&1) | sed 's/^.*(GNU tar) //; s/ Copyright.*\$//')
|
|
END_VERSIONS
|
|
"""
|
|
|
|
stub:
|
|
untar = archive.toString() - '.tar.gz'
|
|
"""
|
|
touch $untar
|
|
|
|
cat <<-END_VERSIONS > versions.yml
|
|
"${task.process}":
|
|
untar: \$(echo \$(tar --version 2>&1) | sed 's/^.*(GNU tar) //; s/ Copyright.*\$//')
|
|
END_VERSIONS
|
|
"""
|
|
}
|