nf-core_modules/.github/workflows/cutadapt.yml

35 lines
754 B
YAML

name: cutadapt
on:
push:
paths:
- software/cutadapt/**
- .github/workflows/cutadapt.yml
- tests
pull_request:
paths:
- software/cutadapt/**
- .github/workflows/cutadapt.yml
- tests
jobs:
run_ci_test:
runs-on: ubuntu-latest
env:
NXF_ANSI_LOG: false
steps:
- uses: actions/checkout@v2
- name: Install Nextflow
run: |
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
- name: Test module with paired-end data
run: |
cd software/cutadapt/test/
nextflow run .
- name: Test module with single-end data
run: |
cd software/cutadapt/test/
nextflow run . --single_end