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3aacd46da2
* backfilled modules with meta.yml that had no license identifier * harmonized BSD license names * whitespace linting at modules/unzip/meta.yml:12 * harmonized software from US NIH-NCBI/NIST to 'US-Government-Work' * Update modules/bcftools/index/meta.yml `bcftools` is dual-licensed, use associative array to allow for multiple licenses Co-authored-by: Michael L Heuer <heuermh@acm.org> Co-authored-by: Michael L Heuer <heuermh@acm.org>
45 lines
1.2 KiB
YAML
45 lines
1.2 KiB
YAML
name: hmmer_hmmalign
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description: hmmalign from the HMMER suite aligns a number of sequences to an HMM profile
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keywords:
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- alignment
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tools:
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- hmmer:
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description: Biosequence analysis using profile hidden Markov models
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homepage: http://hmmer.org/
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documentation: http://hmmer.org/documentation.html
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tool_dev_url: None
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doi: "http://dx.doi.org/10.1371/journal.pcbi.1002195"
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licence: ['BSD-3-Clause']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test' ]
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- fasta:
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type: file
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description: Amino acid or nucleotide fasta file, gzipped or not
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pattern: "*.{fna,fna.gz,faa,faa.gz,fasta,fasta.gz,fa,fa.gz}"
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- hmm:
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type: file
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description: HMM file
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pattern: "*.hmm"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- sthlm:
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type: file
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description: Multiple alignment in gzipped Stockholm format
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pattern: "*.sthlm.gz"
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authors:
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- "@erikrikarddaniel"
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