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nf-core_modules/tests/modules/gatk4
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praveenraj2018 691feeafdc
GATK4 SplitNCigarReads: fasta_fai_dict tuple is now split into separate input channels (#1076) 
* fasta_fai_dict tuple is now split into separate input channels

* fix: lint errors

* fix: pytest errors

* Update modules/gatk4/splitncigarreads/meta.yml

* Update modules/gatk4/splitncigarreads/main.nf

Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
2021-11-16 15:09:30 +01:00
..
applybqsr feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059) 2021-11-11 08:58:59 +01:00
baserecalibrator Update to allow cram + update needed to use the gatk4 modules in sarek (#976) 2021-10-29 13:01:05 +02:00
bedtointervallist Rename software/ directory to modules/ to re-organise module structure (#567) 2021-07-07 10:10:18 +01:00
calculatecontamination feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059) 2021-11-11 08:58:59 +01:00
createsequencedictionary Rename software/ directory to modules/ to re-organise module structure (#567) 2021-07-07 10:10:18 +01:00
createsomaticpanelofnormals feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059) 2021-11-11 08:58:59 +01:00
estimatelibrarycomplexity Add gatk4/estimatelibrarycomplexity (#965) 2021-10-28 17:49:27 +02:00
fastqtosam feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059) 2021-11-11 08:58:59 +01:00
filtermutectcalls feat: fastaidx -> fai (#1073) 2021-11-15 18:03:02 +01:00
genomicsdbimport bug fixes: genomicsdbimport (#1035) 2021-11-06 15:51:15 +00:00
genotypegvcfs New modules added: issues #200 and #310 (#884) 2021-11-15 15:43:06 +00:00
getpileupsummaries feat: _idx -> _tbi (#1074) 2021-11-15 17:49:20 +01:00
haplotypecaller Update to allow cram + update needed to use the gatk4 modules in sarek (#976) 2021-10-29 13:01:05 +02:00
indexfeaturefile New modules added: issues #200 and #310 (#884) 2021-11-15 15:43:06 +00:00
intervallisttools Rename software/ directory to modules/ to re-organise module structure (#567) 2021-07-07 10:10:18 +01:00
learnreadorientationmodel Learnreadorientationmodel (#794) 2021-10-07 13:55:06 +01:00
markduplicates feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059) 2021-11-11 08:58:59 +01:00
mergebamalignment feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059) 2021-11-11 08:58:59 +01:00
mergevcfs feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059) 2021-11-11 08:58:59 +01:00
mutect2 feat: fastaidx -> fai (#1073) 2021-11-15 18:03:02 +01:00
revertsam feat: update gatk4 from 4.2.0.0 to 4.2.3.0 (#1059) 2021-11-11 08:58:59 +01:00
samtofastq Rename software/ directory to modules/ to re-organise module structure (#567) 2021-07-07 10:10:18 +01:00
splitncigarreads GATK4 SplitNCigarReads: fasta_fai_dict tuple is now split into separate input channels (#1076) 2021-11-16 15:09:30 +01:00
variantfiltration Rename software/ directory to modules/ to re-organise module structure (#567) 2021-07-07 10:10:18 +01:00