You cannot select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
42 lines
1.1 KiB
YAML
42 lines
1.1 KiB
YAML
name: gatk4_gatherpileupsummaries
|
|
description: write your description here
|
|
keywords:
|
|
- sort
|
|
tools:
|
|
- gatk4:
|
|
description: Genome Analysis Toolkit (GATK4)
|
|
homepage: https://gatk.broadinstitute.org/hc/en-us
|
|
documentation: https://gatk.broadinstitute.org/hc/en-us
|
|
tool_dev_url: https://github.com/broadinstitute/gatk
|
|
doi: "10.1158/1538-7445.AM2017-3590"
|
|
licence: ["BSD-3-clause"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- pileup:
|
|
type: (list of) file(s)
|
|
description: Pileup files from gatk4/getpileupsummaries
|
|
pattern: "*.pileups.table"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- table:
|
|
type: file
|
|
description: Pileup file
|
|
pattern: "*.pileups.table"
|
|
|
|
authors:
|
|
- "@FriederikeHanssen"
|