mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-13 05:13:09 +00:00
33 lines
865 B
Text
33 lines
865 B
Text
def VERSION = '0.1.1' // Version information not provided by tool on CLI
|
|
|
|
process HMMCOPY_GCCOUNTER {
|
|
label 'process_low'
|
|
|
|
conda (params.enable_conda ? "bioconda::hmmcopy=0.1.1" : null)
|
|
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
|
|
'https://depot.galaxyproject.org/singularity/hmmcopy:0.1.1--h2e03b76_7' :
|
|
'quay.io/biocontainers/hmmcopy:0.1.1--h2e03b76_7' }"
|
|
|
|
input:
|
|
path fasta
|
|
|
|
output:
|
|
path "*.gc.wig" , emit: wig
|
|
path "versions.yml", emit: versions
|
|
|
|
when:
|
|
task.ext.when == null || task.ext.when
|
|
|
|
script:
|
|
def args = task.ext.args ?: ''
|
|
"""
|
|
gcCounter \\
|
|
$args \\
|
|
${fasta} > ${fasta.baseName}.gc.wig
|
|
|
|
cat <<-END_VERSIONS > versions.yml
|
|
"${task.process}":
|
|
hmmcopy: $VERSION
|
|
END_VERSIONS
|
|
"""
|
|
}
|