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43 lines
1.2 KiB
YAML
43 lines
1.2 KiB
YAML
name: mafft
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description: Multiple sequence alignment using MAFFT
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keywords:
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- msa
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- multiple sequence alignment
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tools:
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- mafft:
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description: Multiple alignment program for amino acid or nucleotide sequences based on fast Fourier transform
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homepage: https://mafft.cbrc.jp/alignment/software/
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documentation: https://mafft.cbrc.jp/alignment/software/manual/manual.html
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tool_dev_url: https://mafft.cbrc.jp/alignment/software/source.html
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doi: "10.1093/nar/gkf436"
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licence: ["BSD"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fasta:
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type: file
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description: FASTA file containing the sequences to align
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pattern: "*.{fa,fasta}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- fas:
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type: file
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description: Aligned sequences in FASTA format
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pattern: "*.{fas}"
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authors:
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- "@MillironX"
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