You cannot select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
44 lines
1.3 KiB
YAML
44 lines
1.3 KiB
YAML
name: msisensorpro_scan
|
|
description: MSIsensor-pro evaluates Microsatellite Instability (MSI) for cancer patients with next generation sequencing data. It accepts the whole genome sequencing, whole exome sequencing and target region (panel) sequencing data as input
|
|
keywords:
|
|
- micro-satellite-scan
|
|
- msisensor-pro
|
|
- scan
|
|
tools:
|
|
- msisensorpro:
|
|
description: Microsatellite Instability (MSI) detection using high-throughput sequencing data.
|
|
homepage: https://github.com/xjtu-omics/msisensor-pro
|
|
documentation: https://github.com/xjtu-omics/msisensor-pro/wiki
|
|
tool_dev_url: https://github.com/xjtu-omics/msisensor-pro
|
|
doi: "doi.org/10.1016/j.gpb.2020.02.001"
|
|
licence: ["Custom Licence"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- fasta:
|
|
type: file
|
|
description: Reference genome
|
|
pattern: "*.{fasta}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- list:
|
|
type: file
|
|
description: File containing microsatellite list
|
|
pattern: "*.{list}"
|
|
|
|
authors:
|
|
- "@FriederikeHanssen"
|