nf-core_modules/modules/ngmaster/main.nf
2022-02-04 09:53:32 +01:00

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process NGMASTER {
tag "$meta.id"
label 'process_low'
conda (params.enable_conda ? "bioconda::ngmaster=0.5.8" : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/ngmaster:0.5.8--pyhdfd78af_1' :
'quay.io/biocontainers/ngmaster:0.5.8--pyhdfd78af_1' }"
input:
tuple val(meta), path(fasta)
output:
tuple val(meta), path("*.tsv"), emit: tsv
path "versions.yml" , emit: versions
when:
task.ext.when == null || task.ext.when
script:
def args = task.ext.args ?: ''
def prefix = task.ext.prefix ?: "${meta.id}"
"""
ngmaster \\
$args \\
$fasta \\
> ${prefix}.tsv
cat <<-END_VERSIONS > versions.yml
"${task.process}":
ngmaster: \$( echo \$(ngmaster --version 2>&1) | sed 's/^.*ngmaster //' )
END_VERSIONS
"""
}