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41 lines
976 B
YAML
41 lines
976 B
YAML
name: picard_sortvcf
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description: Sorts vcf files
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keywords:
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- sort
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- vcf
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tools:
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- picard:
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description: Java tools for working with NGS data in the BAM/CRAM/SAM and VCF format
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homepage: https://broadinstitute.github.io/picard/
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documentation: https://broadinstitute.github.io/picard/command-line-overview.html#SortVcf
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licence: ["MIT"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- vcf:
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type: file
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description: VCF file
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pattern: "*.{vcf,vcf.gz}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- vcf:
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type: file
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description: Sorted VCF file
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pattern: "*.{vcf}"
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authors:
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- "@ramprasadn"
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