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49 lines
1.2 KiB
YAML
49 lines
1.2 KiB
YAML
name: seqkit_pair
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description: match up paired-end reads from two fastq files
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keywords:
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- seqkit
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- pair
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tools:
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- seqkit:
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description: Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.
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homepage: https://bioinf.shenwei.me/seqkit/usage/
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documentation: https://bioinf.shenwei.me/seqkit/usage/
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tool_dev_url: https://github.com/shenwei356/seqkit/
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doi: "10.1371/journal.pone.0163962"
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licence: ["MIT"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: |
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List of input paired-end FastQ files.
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- reads:
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type: file
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description: Paired fastq reads
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pattern: "*.paired.fastq.gz"
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- unpaired_reads:
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type: file
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description: Unpaired reads (optional)
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pattern: "*.unpaired.fastq.gz"
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authors:
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- "@sateeshperi"
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- "@mjcipriano"
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- "@hseabolt"
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