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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
32 lines
868 B
YAML
32 lines
868 B
YAML
name: snpsites
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description: Rapidly extracts SNPs from a multi-FASTA alignment.
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keywords:
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- SNPs
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- invariant
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- constant
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tools:
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- snpsites:
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description: Rapidly extracts SNPs from a multi-FASTA alignment.
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homepage: https://www.sanger.ac.uk/tool/snp-sites/
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documentation: https://github.com/sanger-pathogens/snp-sites
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licence: ["GPL-3.0-or-later"]
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input:
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- alignment:
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type: file
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description: fasta alignment file
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pattern: "*.{fasta,fas,fa,aln}"
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output:
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- fasta:
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type: file
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description: Variant fasta file
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pattern: "*.{fas}"
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- constant_sites:
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type: file
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description: Text file containing counts of constant sites
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pattern: "*.{sites.txt}"
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authors:
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- "@avantonder"
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