mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
45 lines
1.1 KiB
YAML
45 lines
1.1 KiB
YAML
name: ucsc_liftover
|
|
description: convert between genome builds
|
|
keywords:
|
|
- liftOver
|
|
tools:
|
|
- ucsc:
|
|
description: Move annotations from one assembly to another
|
|
homepage: http://hgdownload.cse.ucsc.edu/admin/exe/
|
|
documentation: None
|
|
tool_dev_url: None
|
|
doi: ""
|
|
licence: ["varies; see http://genome.ucsc.edu/license"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bed:
|
|
type: file
|
|
description: Browser Extensible Data (BED) file
|
|
pattern: "*.{bed}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "versions.yml"
|
|
- lifted:
|
|
type: file
|
|
description: BED file containing successfully lifted variants
|
|
pattern: "*.{lifted.bed}"
|
|
- unlifted:
|
|
type: file
|
|
description: BED file containing variants that couldn't be lifted
|
|
pattern: "*.{unlifted.bed}"
|
|
|
|
authors:
|
|
- "@nebfield"
|