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55 lines
1.5 KiB
YAML
55 lines
1.5 KiB
YAML
name: filtlong
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description: Filtlong filters long reads based on quality measures or short read data.
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keywords:
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- nanopore
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- quality control
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- QC
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- filtering
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- long reads
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- short reads
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tools:
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- filtlong:
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description: Filtlong is a tool for filtering long reads. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the filter.
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homepage: https://anaconda.org/bioconda/filtlong
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documentation: None
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tool_dev_url: https://github.com/rrwick/Filtlong
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doi: ""
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licence: ["GPL v3"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- shortreads:
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type: file
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description: fastq file
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pattern: "*.{fq,fastq,fq.gz,fastq.gz}"
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- longreads:
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type: file
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description: fastq file
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pattern: "*.{fq,fastq,fq.gz,fastq.gz}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- reads:
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type: file
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description: Filtered (compressed) fastq file
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pattern: "*.fastq.gz"
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- log:
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type: file
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description: Standard error logging file containing summary statistics
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pattern: "*.log"
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authors:
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- "@d4straub"
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- "@sofstam"
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