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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
45 lines
1.1 KiB
YAML
45 lines
1.1 KiB
YAML
name: tabix_bgziptabix
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description: bgzip a sorted tab-delimited genome file and then create tabix index
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keywords:
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- bgzip
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- compress
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- index
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- tabix
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- vcf
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tools:
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- tabix:
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description: Generic indexer for TAB-delimited genome position files.
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homepage: https://www.htslib.org/doc/tabix.html
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documentation: https://www.htslib.org/doc/tabix.1.html
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doi: 10.1093/bioinformatics/btq671
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licence: ["MIT"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- tab:
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type: file
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description: TAB-delimited genome position file
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pattern: "*.{bed,gff,sam,vcf}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- gz:
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type: file
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description: Output compressed file
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pattern: "*.{gz}"
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- tbi:
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type: file
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description: tabix index file
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pattern: "*.{gz.tbi}"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@maxulysse"
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