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https://github.com/MillironX/nf-core_modules.git
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b3e9b88e80
* Added: csi output to TABIX * Added: tests for csi * Fix tiddit/sv (#1580) * Fix fasta ref option for TIDDIT_SV * Add md5sum's to tiddit/sv tests Co-authored-by: Daniel Cooke <dcooke@well.ox.ac.uk> * Fix: prettier issues Co-authored-by: Daniel Cooke <daniel.cooke@invitae.com> Co-authored-by: Daniel Cooke <dcooke@well.ox.ac.uk>
40 lines
1.3 KiB
Text
40 lines
1.3 KiB
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { TABIX_TABIX as TABIX_BED } from '../../../../modules/tabix/tabix/main.nf'
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include { TABIX_TABIX as TABIX_GFF } from '../../../../modules/tabix/tabix/main.nf'
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include { TABIX_TABIX as TABIX_VCF_TBI } from '../../../../modules/tabix/tabix/main.nf'
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include { TABIX_TABIX as TABIX_VCF_CSI } from '../../../../modules/tabix/tabix/main.nf'
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workflow test_tabix_tabix_bed {
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input = [ [ id:'B.bed' ], // meta map
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[ file(params.test_data['sarscov2']['genome']['test_bed_gz'], checkIfExists: true) ]
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]
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TABIX_BED ( input )
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}
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workflow test_tabix_tabix_gff {
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input = [ [ id:'test' ], // meta map
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[ file(params.test_data['sarscov2']['genome']['genome_gff3_gz'], checkIfExists: true) ]
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]
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TABIX_GFF ( input )
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}
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workflow test_tabix_tabix_vcf_tbi {
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input = [ [ id:'test.vcf' ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_vcf_gz'], checkIfExists: true) ]
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]
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TABIX_VCF_TBI ( input )
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}
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workflow test_tabix_tabix_vcf_csi {
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input = [ [ id:'test.vcf' ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_vcf_gz'], checkIfExists: true) ]
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]
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TABIX_VCF_CSI ( input )
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}
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