You cannot select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
61 lines
1.8 KiB
YAML
61 lines
1.8 KiB
YAML
name: "prinseqplusplus"
|
|
description: PRINSEQ++ is a C++ implementation of the prinseq-lite.pl program. It can be used to filter, reformat or trim genomic and metagenomic sequence data
|
|
keywords:
|
|
- fastq
|
|
- fasta
|
|
- filter
|
|
- trim
|
|
tools:
|
|
- "prinseqplusplus":
|
|
description: "PRINSEQ++ - Multi-threaded C++ sequence cleaning"
|
|
homepage: "https://github.com/Adrian-Cantu/PRINSEQ-plus-plus"
|
|
documentation: "https://github.com/Adrian-Cantu/PRINSEQ-plus-plus"
|
|
tool_dev_url: "https://github.com/Adrian-Cantu/PRINSEQ-plus-plus"
|
|
doi: "10.7287/peerj.preprints.27553v1"
|
|
licence: "['GPL v2']"
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- reads:
|
|
type: file
|
|
description: |
|
|
List of input FastQ files of size 1 and 2 for single-end and paired-end
|
|
data, respectively.
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- good_reads:
|
|
type: file
|
|
description: Reads passing filter(s) in gzipped FASTQ format
|
|
pattern: "*_good_out_{R1,R2}.fastq.gz"
|
|
- single_reads:
|
|
type: file
|
|
description: |
|
|
Single reads without the pair passing filter(s) in gzipped FASTQ format
|
|
pattern: "*_single_out_{R1,R2}.fastq.gz"
|
|
- bad_reads:
|
|
type: file
|
|
description: |
|
|
Reads without not passing filter(s) in gzipped FASTQ format
|
|
pattern: "*_bad_out_{R1,R2}.fastq.gz"
|
|
- log:
|
|
type: file
|
|
description: |
|
|
Verbose level 2 STDOUT information in a log file
|
|
pattern: "*.log"
|
|
|
|
authors:
|
|
- "@jfy133"
|