mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 11:08:17 +00:00
a6ca2b006b
* add software/cooler * fix the wrong files uploaded. * create a branch for cooler/merge * remove the bin_size from metadata. * update the test_data to test-datasets * update pytest_modules.yml * update the test file from single input file to two input file. update the output file from hdf5 to bedpe. * update the version.txt to version.yml and functions.nf * change version.yml to versions * update the test file path and fix the output versions. * Update meta.yml Correct "version" to "versions" * Update main.nf Fix typo * Update main.nf Remove some spaces Co-authored-by: Gregor Sturm <mail@gregor-sturm.de> Co-authored-by: Sébastien Guizard <sguizard@ed.ac.uk>
41 lines
1.1 KiB
YAML
41 lines
1.1 KiB
YAML
name: cooler_merge
|
|
description: Merge multiple coolers with identical axes
|
|
keywords:
|
|
- merge
|
|
tools:
|
|
- cooler:
|
|
description: Sparse binary format for genomic interaction matrices
|
|
homepage: https://cooler.readthedocs.io/en/latest/index.html
|
|
documentation: https://cooler.readthedocs.io/en/latest/index.html
|
|
tool_dev_url: https://github.com/open2c/cooler
|
|
doi: "10.1093/bioinformatics/btz540"
|
|
licence: ['BSD-3-clause']
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- cool:
|
|
type: file
|
|
description: Path to COOL file
|
|
pattern: "*.{cool,mcool}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "versions.yml"
|
|
- cool:
|
|
type: file
|
|
description: Path to COOL file
|
|
pattern: "*.cool"
|
|
|
|
authors:
|
|
- "@jianhong"
|