nf-core_modules/tests/modules/pangolin/test.yml at f207f6c870eb0f2ab7ce11562baf990e6b47d3f6 - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 11:08:17 +00:00

Harshil Patel e751e5040a

Bump software versions for viralrecon modules (#1198 )

* Bump software versions for viralrecon modules

* Remove custom params.save_unaligned from bowtie2_align

* Unify samtools modules and error if input and output names are the same

* Fix ALL the tests

2022-01-07 17:52:39 +00:00

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 - name: pangolin
   command: nextflow run ./tests/modules/pangolin -entry test_pangolin -c ./tests/config/nextflow.config -c ./tests/modules/pangolin/nextflow.config
   tags:
     - pangolin
   files:
     - path: ./output/pangolin/test.pangolin.csv
       md5sum: 2563856ee31ba2a4a05705ff940a28cc