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https://github.com/MillironX/nf-core_modules.git
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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
20 lines
868 B
YAML
20 lines
868 B
YAML
- name: picard markduplicates sorted bam
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command: nextflow run ./tests/modules/picard/markduplicates -entry test_picard_markduplicates_sorted_bam -c ./tests/config/nextflow.config -c ./tests/modules/picard/markduplicates/nextflow.config
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tags:
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- picard
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- picard/markduplicates
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files:
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- path: ./output/picard/test.MarkDuplicates.metrics.txt
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contains:
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- "1.0 97 97"
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- path: ./output/picard/test.bam
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- name: picard markduplicates unsorted bam
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command: nextflow run ./tests/modules/picard/markduplicates -entry test_picard_markduplicates_unsorted_bam -c ./tests/config/nextflow.config -c ./tests/modules/picard/markduplicates/nextflow.config
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tags:
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- picard
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- picard/markduplicates
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files:
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- path: ./output/picard/test.MarkDuplicates.metrics.txt
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contains:
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- "1.0 97 97"
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- path: ./output/picard/test.bam
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