mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 03:28:17 +00:00
26 lines
1.3 KiB
YAML
26 lines
1.3 KiB
YAML
- name: vsearch usearchglobal test_vsearch_usearchglobal
|
|
command: nextflow run ./tests/modules/vsearch/usearchglobal -entry test_vsearch_usearchglobal -c ./tests/config/nextflow.config -c ./tests/modules/vsearch/usearchglobal/nextflow.config
|
|
tags:
|
|
- vsearch/usearchglobal
|
|
- vsearch
|
|
files:
|
|
- path: output/vsearch/test.aln
|
|
contains:
|
|
- "vsearch --usearch_global transcriptome.fasta --db genome.fasta --id 0.985 --threads 2 --alnout test.aln"
|
|
- "Query >lcl|MT192765.1_cds_QIK50427.1_2"
|
|
- "%Id TLen Target"
|
|
- "100% 29829 MT192765.1"
|
|
- "Query 3822nt >lcl|MT192765.1_cds_QIK50427.1_2"
|
|
- "Target 29829nt >MT192765.1"
|
|
- "Qry 21249 + CAACAGAGTTGTTATTTCTAGTGATGTTCTTGTTAACAACTAA 21291"
|
|
- "Tgt 21506 + CAACAGAGTTGTTATTTCTAGTGATGTTCTTGTTAACAACTAA 21548"
|
|
- "21291 cols, 21290 ids (100.0%), 1 gaps (0.0%)"
|
|
|
|
- name: vsearch usearchglobal test_vsearch_usearchglobal_userout
|
|
command: nextflow run ./tests/modules/vsearch/usearchglobal -entry test_vsearch_usearchglobal_userout -c ./tests/config/nextflow.config -c ./tests/modules/vsearch/usearchglobal/nextflow.config
|
|
tags:
|
|
- vsearch/usearchglobal
|
|
- vsearch
|
|
files:
|
|
- path: output/vsearch/test.tsv
|
|
md5sum: b6cc50f7c8d18cb82e74dab70ed4baab
|